Bioinformatics Engineer at Sonic Reference Laboratory, Inc summary:
The Bioinformatics Engineer at Sonic Reference Laboratory is responsible for the development and management of web applications and databases in a clinical NGS setting. This role involves automating workflows, troubleshooting bioinformatics issues, and applying data engineering techniques. The position requires proficiency in programming languages, relational database design, and effective communication of technical concepts to diverse teams.
Job Functions, Duties, Responsibilities and Position Qualifications:
The Bioinformatics Engineer is responsible for supporting and managing web application development, databases, and data engineering aspects in a Clinical /NGS setting for Sonic Reference Laboratory.
Location: Austin, TX 78728
Status: Full-time
Schedule/Shift: Hybrid, Business hours
Responsibilities
- Maintain bioinformatics related clinical assay operations, implement updates, troubleshoot, and resolve daily bioinformatics tickets/issues/needs.
- Work on ways to automate manual processes and input/output throughout the workflow
- Work with instruments in the workflow, assist in connectivity and general troubleshooting
- Application of data engineering & automation techniques in a Clinical/NGS Lab Perform other duties as assigned. Maintain the diverse group’s harmony.
Requirements
Skills:
- Ability to code in various programing Languages (Python, Shell, R, Java)
- Exposure to modern relational database design, development (PostgreSQL/MySQL/MsSQL)
- Ability to work with Linux operating systems (including in a HPC environment).
- Ability to effectively communicate technical components to non-technical staff
- Understanding of Next generation Sequence data analysis processes (Alignment/Variant Calling/Annotations/Gene Expression)
- Ability to identify and apply statistical methods for data analysis & visualization
- Familiarity on best practices for the full software development life cycle, including coding standards, code reviews, source control management (Git), build processes, and operations.
- Knowledge with front end web application development will be a plus
- Exposure to Django web framework is a plus
- Prior experience in a CAP/CLIA or NYSDOH certified clinical laboratory a plus
- Ability to explain technical concepts to non-technical staff and working effectively in diverse teams.
- Strong focus on quality, accuracy and consistency in all tasks.
- Ability to meet deadlines while handling frequent interruptions and shifting priorities.
- Excellent oral and written communication skills for data reporting, procedure documentation and SOP adherence.
Qualifications:
- Software/DB/programming languages: Python, DJANGO, SQL, HTML, CSS Node.JS and Shell scripting
- Operating systems, Linux, Windows
Education:
- MS in Biomedical Engineering/Computer Science/Bioinformatics, or
- Bachelors in Computer Science with 2 years’ work experience in Bioinformatics/IT field
License/Certification:
Scheduled Weekly Hours:
40
Work Shift:
Job Category:
Information Technology
Company:
Sonic Reference Laboratory, Inc
Sonic Healthcare USA is an equal opportunity employer that celebrates diversity and is committed to an inclusive workplace for all employees. We prohibit discrimination and harassment of any kind based on race, color, sex, religion, age, national origin, disability, genetics, veteran status, sexual orientation, gender identity or expression, or any other characteristic protected by federal, state, or local laws.
Keywords:
Bioinformatics, Web Application Development, Data Engineering, Clinical NGS, Python Programming, Relational Databases, Automation Techniques, Next Generation Sequencing, Data Analysis, Healthcare Technology